Eamonn Mallie has published the following books:
- Under The Tilley Lamp (2019)
- Kathleen Isabella Metcalfe Mackie (with Paddy Mackie) (2009)
- Blackshaw (2003)
- Endgame in Ireland (with David McKittrick) (2001)
- One Hundred Years of Irish Art – A Millennium Presentation’ (2000)
- The Fight for Peace: Secret Story Behind The Irish Peace Process (with David McKittrick) (1997)
- Tom Carr: An Appreciation (1989)
- The Provisional IRA (with Patrick Bishop) (1988)